%-------------------------------------------------------------------------------
% TEMPLATE FOR UCL MSc THESIS
% (c) Paul Oswald, 2023
% This is a template for a MSc Thesis document, based on a Microsoft Word template given 
% by the Department of Medical Physics and Biomedical Engineering, UCL. 
%------------------------------------------------------------------------------- 
% ------------------ DOCUMENT SETUP ------------------ 
% The document class defines the document type (report) and sets the font size (12pt)
\documentclass[12pt]{report}
\author{Your Name}
% Inputs the Document Packages
\input{_Packages}
% Controls how many subsections the document can take
%  and how many of those will get put into the contents pages.
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}
% Line Spacing
\setstretch{1.5}
% Places a dot after Chapter/Section/Subsection number in Table of Contents
\renewcommand{\cftchapaftersnum}{.}
\renewcommand{\cftsecaftersnum}{.}
\renewcommand{\cftsubsecaftersnum}{.}
%  Customize Dot spacing in Table of Contents/List of Figures/Tables
\renewcommand{\cftdotsep}{0.3}
% Line Break Properties
\tolerance=1
\emergencystretch=\maxdimen
\hyphenpenalty=10000
\hbadness=10000
% Formatting Table of Contents/Lists titles
\renewcommand{\contentsname}{\bfseries\LARGE{CONTENTS}}
\renewcommand{\listfigurename}{\bfseries\LARGE{LIST OF FIGURES}}
% Signature Line for the declaration
\newbox\namebox
\newdimen\signboxdim
\def\signature#1{%
    \setbox\namebox=\hbox{#1}
    \signboxdim=\dimexpr(\wd\namebox+3cm)
    \parbox[t]{\signboxdim}{%
        \centering
            \hrulefill\\    % for a line
            #1
        \par}%
    }
% Title Formatting customization
\titleformat{\chapter}{\normalfont\bfseries\LARGE}{\thechapter.}{1em}{\MakeUppercase}
\titleformat{\section}{\normalfont\bfseries\large}{\thesection.}{1em}{\MakeUppercase}
\titlespacing*{\section} {0pt} {0pt} {15pt} % left, before, after
\titleformat{\subsection}{\normalfont\bfseries\large}{\thesubsection.}{1em}{}
\titlespacing*{\subsection} {0pt} {10pt} {10pt}
\titleformat{\subsubsection}{\normalfont\bfseries\large}{\thesubsubsection.}{1em}{}
\titlespacing*{\subsubsection} {0pt} {10pt} {10pt}
% HEADER AND FOOTER
\pagestyle{fancy}  % Set Page Style (Header and Footer Style)
\fancyhf{}  % Clears the header and footer (from the default info)
% Header
\renewcommand{\headrulewidth}{0pt}  % Removes the default Horizontal Line in Header
% Optional Headers
%\fancyhead[L]{}
%\fancyhead[R]{2022/2023}
% Footer
\fancyfoot[C]{\thepage} % Page Number
% Change figure numbering per section
\numberwithin{figure}{chapter}
%Acronym entries
\makeglossaries
\newacronym{US}{US}{Ultrasound}
%  -------------------------------------------------
%  --------- The document starts from here --------- 
%  -------------------------------------------------
\begin{document}
% ------------------  TITLE PAGE -------------------
\begin{titlepage}
\begin{center}
    % UCL IMAGE
    \vspace*{-3cm}
    \makebox[\textwidth]{\includegraphics[width=\paperwidth]{Images/UCL_header.png}}
    
    \vspace{2.3cm}
    
    % Title
    {\relscale{1.19}{A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science (MSc) in}}
    \vspace{1cm}
    {\relscale{1.15}\textbf{PHYSICS AND ENGINEERING IN MEDICINE\\}}
    \vspace{0.3cm}
    {\relscale{1.15}\textbf{UNIVERSITY COLLEGE LONDON\\}}
    \vspace{2.4cm}
    
    {\relscale{1.19}{TITLE}}\\
    %\vspace{0.1cm}
    By\\
    %\vspace{0.1cm}
    YOUR NAME\\
    \vspace{0.9cm}
    {\begin{singlespace}First Supervisor: \\
    Second Supervisor: \\\end{singlespace}}
\end{center}
{\raggedleft\vfill{\begin{singlespace}
     Department of Medical Physics\\
  and Biomedical Engineering\\
\end{singlespace}
 UNIVERSITY COLLEGE LONDON\\
 \begin{singlespace}
 Date of submission: \today\\
 Word count: WORD COUNT\\
 \end{singlespace}
}\par
}
\end{titlepage}
% ----------------------  DECLARATION -----------------------
\newpage
\chapter*{Declaration} % the Asterix (*) indicates that this section will be added to the table of contents but no number will be present beside it.
\addcontentsline{toc}{chapter}{Declaration}
I, YOUR NAME confirm that the work presented in this report is my own. Where information has been derived from other sources, I confirm that this has been indicated in the report.
\vspace*{3cm}
\noindent\signature{YOUR NAME}
\newpage
% ----------------------  ABSTRACT -----------------------
\newpage
\chapter*{Abstract} % the Asterix (*) indicates that this section will be added to the table of contents but no number will be present beside it.
\addcontentsline{toc}{chapter}{Abstract}
\input{Abstract}
% -----------------  ACKNOWLEDGEMENTS  -------------------
\newpage
\chapter*{Acknowledgements}
\addcontentsline{toc}{chapter}{Acknowledgement}
\input{Acknowledgments}
\newpage
% -----------------  ACRONYMS  -------------------
\newpage
%\chapter*{Acronyms}
\addcontentsline{toc}{chapter}{Acronyms}
\printglossary[type=\acronymtype,nonumberlist,nopostdot]
\newpage
% ------------------  TABLE OF CONTENTS --------------------
\tableofcontents 
% -------------------  LIST OF FIGURES --------------------
\newpage 
%{\let\oldnumberline\numberline       % Uncomment to add the word 'Figure' to figure number in List of Figures
%\renewcommand{\numberline}{\figurename~\oldnumberline}  
\listoffigures%}
\addcontentsline{toc}{chapter}{List of Figures} % Add List of figures into contents without any numeration 
% -------------------  INTRODUCTION  ---------------------
\chapter{Introduction}
\input{Introduction} % Section/Chapter entries can be done in the Main.tex file or in a  
                       % separate tex file for longer and more complex documents
% -------------------  MATERIALS AND METHODS  ---------------------
\chapter{Materials and Methods}
\input{Materials and Methods} % Section/Chapter entries can be done in the Main.tex file or in a  
                       % separate tex file for longer and more complex documents
% -------------------  RESULTS  ---------------------
\chapter{Results}
\input{Results} % Section/Chapter entries can be done in the Main.tex file or in a  
                       % separate tex file for longer and more complex documents
% -------------------  DISCUSSION  ---------------------
\chapter{Discussion}
\input{Discussion} % Section/Chapter entries can be done in the Main.tex file or in a  
                       % separate tex file for longer and more complex documents
                       
% -------------------  CONCLUSION AND FUTURE OUTLOOK  ---------------------
\chapter{Conclusion and Future Outlook}
\input{Conclusion and Future Outlook} % Section/Chapter entries can be done in the Main.tex file or in a  
                       % separate tex file for longer and more complex documents                       
% -------------------  BIBLIOGRAPHY ---------------------
\newpage
\bibliographystyle{elsarticle-num.bst}
\bibliography{References}
\addcontentsline{toc}{chapter}{References} % Adds References Section to Table of Contents
% -------------------  Appendix  ---------------------
\chapter*{Appendix}
\addcontentsline{toc}{chapter}{Appendix}
\input{Appendix} % Section/Chapter entries can be done in the Main.tex file or in a  
                       % separate tex file for longer and more complex documents                       
\end{document}
%  -------------------------------------------------
%  --------- The document ends from here ----------- 
%  -------------------------------------------------